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STRINGSTRING
ddx58 protein (Xenopus tropicalis) - STRING interaction network
"ddx58" - DEXD/H-box helicase 58 in Xenopus tropicalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx58DEXD/H-box helicase 58; DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (919 aa)    
Predicted Functional Partners:
MAVS
Mitochondrial antiviral signaling protein (95 aa)
     
  0.996
cyld
Uncharacterized protein; Cylindromatosis (turban tumor syndrome) ; Belongs to the peptidase C19 family (972 aa)
       
  0.968
UBC
Ubiquitin C (229 aa)
     
  0.966
ubb
Ubiquitin C (645 aa)
     
  0.966
irf7
Interferon regulatory factor 7 (481 aa)
     
   
  0.939
usp25
Uncharacterized protein; Ubiquitin specific peptidase 25 (1050 aa)
     
 
  0.936
usp21
Ubiquitin specific peptidase 21; Belongs to the peptidase C19 family (554 aa)
     
  0.935
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1 (669 aa)
     
  0.925
atg5
Autophagy protein 5; Involved in autophagic vesicle formation (275 aa)
       
  0.922
rps27a
Ribosomal protein S27a (155 aa)
     
    0.917
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. (Silurana) tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, Xenopus tropicalis, western clawed frog
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