STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mpp6ADAMTS like 3; Belongs to the MAGUK family. (584 aa)    
Predicted Functional Partners:
lin7b
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
    
 
 0.540
lin7c
Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.
    
 
 0.540
lin7a
Uncharacterized protein.
    
 
 0.540
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
  
  
 0.530
aprt
Adenine phosphoribosyltransferase.
  
 
 0.497
LOC100145149
Fatty acid binding protein 3.
  
 
 0.497
apba1
Acyl-CoA synthetase short chain family member 1.
   
 
 0.482
APBA3
Amyloid beta precursor protein binding family A member 3.
   
 
 0.482
apba2
Anaphase promoting complex subunit 5.
   
 
 0.482
kansl1
Obg-like ATPase 1.
      
 0.463
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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