STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nek7Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (357 aa)    
Predicted Functional Partners:
nek9
Protein kinase domain-containing protein.
    
0.908
anks3
Nipsnap homolog 2.
    
 
 0.634
anks6
Uncharacterized protein.
    
 
 0.569
LOC100493406
Mediator complex subunit 15.
    
 
 0.537
pcdhgb5l.5
Putative ortholog of protocadherin gamma B5, 5 of 5.
    
 
 0.537
nek6-2
Ig-like domain-containing protein.
     
  0.499
invs
ANK_REP_REGION domain-containing protein.
    
 
 0.423
mast3
Zinc finger, C2HC-type containing 1A.
   
 
 
0.416
cep250
Uncharacterized protein.
    
  0.404
nupl2
Nucleoporin NUP42; Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm.
     
 0.403
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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