STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
daw1Dynein assembly factor with wdr repeat domains 1; May play a role in axonemal outer row dynein assembly (417 aa)    
Predicted Functional Partners:
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31; Involved in pre-mRNA splicing. Required for the assembly of the U4/U5/U6 tri-snRNP complex, one of the building blocks of the spliceosome (By similarity)
   
 
 0.830
prpf6
Pre-mrna-processing factor 6; Uncharacterized protein; PRP6 pre-mRNA processing factor 6 homolog
   
 
 0.820
prpf8
Pre-mrna-processing-splicing factor 8; PRP8 pre-mRNA processing factor 8 homolog
   
 
 0.813
sf3a3
Splicing factor 3a, subunit 3, 60kDa
   
 
 0.807
sf3a2
Splicing factor 3a, subunit 2, 66kDa
   
 
 0.799
sart1
SART1, U4/U6.U5 tri-snRNP-associated protein 1; Squamous cell carcinoma antigen recognized by T cells
   
 
 0.795
prpf3
U4/U6 small nuclear ribonucleoprotein Prp3; PRP3 pre-mRNA processing factor 3 homolog
   
 
 0.756
ppp1r42
Novel leucine rich repeat domain containing protein; Leucine rich repeat containing 67
   
 
 0.756
snrnp200
Small nuclear ribonucleoprotein 200kDa (U5)
   
 
 0.747
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
   
 
 0.746
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. (Silurana) tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, western clawed frog
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