STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcoln3WD repeat, sterile alpha motif and U-box domain containing 1. (554 aa)    
Predicted Functional Partners:
mcoln1
Mucolipin 1.
  
  
 
0.902
trpm8
Transient receptor potential cation channel subfamily M member 8.
     
 0.474
slc19a3.2
Novel solute carrier family 19 protein.
     
  0.400
NEURL2
Neuralized E3 ubiquitin protein ligase 2.
     
  0.400
REEP3
Receptor expression-enhancing protein.
     
  0.400
tada1
Transcriptional adapter 1; Probably involved in transcriptional regulation; Belongs to the TADA1 family.
     
  0.400
mlh1
Mitochondrial ribosomal protein L1.
     
  0.400
sesn1
Uncharacterized protein.
     
  0.400
trpc4ap-2
Uncharacterized protein.
     
  0.400
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.