STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptbn2Spectrin beta chain; Belongs to the spectrin family. (2406 aa)    
Predicted Functional Partners:
sptan1
Uncharacterized protein.
   
 
0.779
LOC100495258
Uncharacterized protein.
    
 
 0.464
bcar1
SH3 domain-containing protein.
    
 
 0.464
golgb1
Latent transforming growth factor beta binding protein 4.
    
 
 0.464
sphkap
Protocadherin 10.
   
  
 0.460
LOC108648864
Histone H2B; Belongs to the histone H2B family.
      
 0.457
LOC108648864-2
Histone H2B 1.1-like.
      
 0.457
LOC108648862
Histone H2B 1.1-like.
      
 0.457
LOC101731959
Histone H2B 1.1-like.
      
 0.457
LOC108648864-3
Histone H2B 1.1-like.
      
 0.457
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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