STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srsf4-2Taxilin beta. (408 aa)    
Predicted Functional Partners:
arid4b
Transmembrane protein 87A.
   
  
 0.750
arid4a
Tumor protein p53 inducible protein 3.
   
  
 0.750
kdsr
Protocadherin 18; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
 0.735
cnot11
Von Willebrand factor C domain-containing protein 2-like, gene 2.
    
   0.672
LOC100145011
Bromodomain containing 4.
  
 
 0.668
etfa
Electron transferring flavoprotein, alpha polypeptide.
  
 
 0.613
etfb
Pyruvate dehydrogenase E1 beta subunit.
  
 
 0.611
dot1l
DOT1-like histone H3K79 methyltransferase.
  
  
 0.604
tmem130
Basic leucine zipper nuclear factor 1.
      
 0.598
NGEF
Neuronal guanine nucleotide exchange factor.
      
 0.589
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.