STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem161bExcision repair cross-complementation group 4. (491 aa)    
Predicted Functional Partners:
KBTBD12
Kelch repeat and BTB domain containing 12.
      
 0.636
PIGG
Phosphatidylinositol glycan anchor biosynthesis class G.
      
 0.544
ggps1
Protocadherin 8; Belongs to the FPP/GGPP synthase family.
      
 0.497
mxra7
Uncharacterized protein.
      
 0.472
sumf2
DNA replication licensing factor mcm5.
      
 0.471
slc2a13
PHD finger protein 21B; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.471
NAALADL2
N-acetylated alpha-linked acidic dipeptidase like 2.
      
 0.471
TAFA3
TAFA chemokine like family member 3.
      
 0.470
cwc22
Methyl-CpG binding domain protein 5.
      
 0.467
ccdc169
Uncharacterized protein.
      
 0.463
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.