STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp13Ubiquitin carboxyl-terminal hydrolase 13; Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). (858 aa)    
Predicted Functional Partners:
mysm1
Tyrosine kinase 2.
   
 
 0.777
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.763
rps27a
Ribosomal protein S27a.
    
 
 0.746
pdcd11
Programmed cell death 11.
    
 
 0.681
ubc
Uncharacterized protein.
    
 
 0.681
usp7
Synaptophysin; Belongs to the peptidase C19 family.
   
 
 0.644
YOD1
YOD1 deubiquitinase.
      
 0.597
usp19
Uncharacterized protein.
   
 
 0.595
rad23b
Ubiquitin carboxyl-terminal hydrolase BAP1.
    
 
 0.587
ncoa6-2
USP domain-containing protein; Belongs to the peptidase C19 family.
      
 0.579
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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