STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100498066Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (319 aa)    
Predicted Functional Partners:
lrat
Lecithin retinol acyltransferase.
     
 0.906
BCO1
Beta-carotene oxygenase 1.
     
 0.905
cyp27c1
SprT-like domain-containing protein Spartan; Belongs to the cytochrome P450 family.
   
 
 0.901
LOC100488563
SET domain bifurcated 1.
     
 0.900
PNPLA4
Patatin like phospholipase domain containing 4.
     
  0.900
retsat
LOC100158500 protein.
     
 0.900
aldh1a3
Protein phosphatase 1 regulatory subunit 7; Belongs to the aldehyde dehydrogenase family.
   
 
 0.691
aldh1a2
MAM domain containing 4; Belongs to the aldehyde dehydrogenase family.
   
 
 0.664
aldh1a1
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.664
aox1
Aldehyde oxidase 1.
     
  0.650
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.