Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BARX1 | ISL1 | ENSXETP00000023208 | ENSXETP00000038463 | BARX homeobox 1. | ISL LIM homeobox 1. | 0.434 |
ENSXETP00000052435 | ISL1 | ENSXETP00000052435 | ENSXETP00000038463 | LIM zinc-binding domain-containing protein. | ISL LIM homeobox 1. | 0.671 |
ENSXETP00000052435 | ldb1 | ENSXETP00000052435 | ENSXETP00000015633 | LIM zinc-binding domain-containing protein. | LIM domain-binding protein 1; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation (By similarity). | 0.584 |
ENSXETP00000052435 | ldb2 | ENSXETP00000052435 | ENSXETP00000029738 | LIM zinc-binding domain-containing protein. | Claudin 8, gene 1. | 0.584 |
ISL1 | BARX1 | ENSXETP00000038463 | ENSXETP00000023208 | ISL LIM homeobox 1. | BARX homeobox 1. | 0.434 |
ISL1 | ENSXETP00000052435 | ENSXETP00000038463 | ENSXETP00000052435 | ISL LIM homeobox 1. | LIM zinc-binding domain-containing protein. | 0.671 |
ISL1 | MEIS1 | ENSXETP00000038463 | ENSXETP00000029756 | ISL LIM homeobox 1. | Meis homeobox 1. | 0.456 |
ISL1 | ets2 | ENSXETP00000038463 | ENSXETP00000036821 | ISL LIM homeobox 1. | Protein C-ets-2; Transcription factor; Belongs to the ETS family. | 0.527 |
ISL1 | gabra3 | ENSXETP00000038463 | ENSXETP00000052431 | ISL LIM homeobox 1. | PHD finger protein 19. | 0.746 |
ISL1 | gata4 | ENSXETP00000038463 | ENSXETP00000003394 | ISL LIM homeobox 1. | DNA replication licensing factor mcm4. | 0.440 |
ISL1 | ldb1 | ENSXETP00000038463 | ENSXETP00000015633 | ISL LIM homeobox 1. | LIM domain-binding protein 1; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation (By similarity). | 0.638 |
ISL1 | ldb2 | ENSXETP00000038463 | ENSXETP00000029738 | ISL LIM homeobox 1. | Claudin 8, gene 1. | 0.638 |
ISL1 | nkx2-5 | ENSXETP00000038463 | ENSXETP00000038325 | ISL LIM homeobox 1. | Toll-like receptor12. | 0.635 |
ISL1 | zfpm2 | ENSXETP00000038463 | ENSXETP00000002023 | ISL LIM homeobox 1. | GPI mannosyltransferase 1. | 0.580 |
MEIS1 | ISL1 | ENSXETP00000029756 | ENSXETP00000038463 | Meis homeobox 1. | ISL LIM homeobox 1. | 0.456 |
ets2 | ISL1 | ENSXETP00000036821 | ENSXETP00000038463 | Protein C-ets-2; Transcription factor; Belongs to the ETS family. | ISL LIM homeobox 1. | 0.527 |
ets2 | nkx2-5 | ENSXETP00000036821 | ENSXETP00000038325 | Protein C-ets-2; Transcription factor; Belongs to the ETS family. | Toll-like receptor12. | 0.417 |
ets2 | zfpm2 | ENSXETP00000036821 | ENSXETP00000002023 | Protein C-ets-2; Transcription factor; Belongs to the ETS family. | GPI mannosyltransferase 1. | 0.459 |
gabra3 | ISL1 | ENSXETP00000052431 | ENSXETP00000038463 | PHD finger protein 19. | ISL LIM homeobox 1. | 0.746 |
gabra3 | ldb1 | ENSXETP00000052431 | ENSXETP00000015633 | PHD finger protein 19. | LIM domain-binding protein 1; Binds to the LIM domain of a wide variety of LIM domain- containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation (By similarity). | 0.584 |
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