STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPATA2Spermatogenesis associated 2. (519 aa)    
Predicted Functional Partners:
cyld
TLR4 interactor with leucine-rich repeats; Belongs to the peptidase C19 family.
     
 0.914
rbck1
RING-type domain-containing protein.
     
  0.900
LOC100145743
Decapping mRNA 1A.
     
 
0.900
spata2l
Protein tyrosine phosphatase 4A1.
     
 
0.900
rnf31
Uncharacterized protein.
     
  0.900
ets2
Protein C-ets-2; Transcription factor; Belongs to the ETS family.
      
 0.457
rdh7
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.457
LOC100488102
MKI67 FHA domain-interacting nucleolar phosphoprotein-like.
      
 0.457
hes5.4
Uncharacterized protein.
      
 0.416
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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