STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htr2aSolute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29. (483 aa)    
Predicted Functional Partners:
HTR2C
5-hydroxytryptamine receptor 2C.
    
0.964
htr2b
Ras homolog family member C.
  
 
0.942
gna11
Guanine nucleotide binding protein (G protein), alpha 11 (Gq class).
    
 0.928
gnaq
Guanine nucleotide binding protein (G protein), q polypeptide.
    
 0.928
GRM2
Glutamate metabotropic receptor 2.
    
 
 0.774
gna14
Guanine nucleotide binding protein (G protein), alpha 14.
    
 0.748
gna15
BCL2 associated athanogene 4.
    
  0.689
gnas
ATPase family AAA domain-containing protein 1.
    
 
 0.661
tph1
Trace amine associated receptor 2 (gene/pseudogene).
      
 0.570
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.562
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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