STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem171Uncharacterized protein. (331 aa)    
Predicted Functional Partners:
mansc1
PHD and ring finger domains 1.
      
 0.821
retreg3
Reticulophagy regulator 3.
      
 0.794
zc3h12a
Zinc finger CCCH-type containing 12A.
      
 0.656
pacc1
Proton-activated chloride channel; Proton-activated chloride channel that mediates import of chloride ion in response to extracellular acidic pH.
      
 0.655
fam189a2
ADAM metallopeptidase domain 15.
      
 0.654
tmem221
Uncharacterized protein.
      
 0.592
gpr137c
LOC100145204 protein.
      
 0.585
ZNF366
Zinc finger protein 366.
      
 0.549
clec10a
Asialoglycoprotein receptor 2.
      
 0.529
znf644
Eukaryotic translation initiation factor 2A.
  
     0.472
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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