STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prex1Enah/Vasp-like. (1638 aa)    
Predicted Functional Partners:
cdc42
Uncharacterized protein.
    
 
 0.619
tlk2
Serine/threonine-protein kinase tousled-like 2; Negative regulator of amino acid starvation-induced autophagy.
      
 0.472
RABIF
RAB interacting factor.
      
 0.454
gnb3
Zinc finger, BED-type-containing 8.
    
 
 0.441
gnb1
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 
 0.441
gnb4
LOC549706 protein.
    
 
 0.441
gnb5
TATA-box binding protein associated factor 13.
    
 
 0.441
socs2
Suppressor of cytokine signaling 2 variant 1.
      
 0.420
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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