STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
egfl8EGF-like-domain, multiple 8. (207 aa)    
Predicted Functional Partners:
fkbpl
Sprouty-related, EVH1 domain-containing protein 1.
    
 
 0.585
timeless
Heat shock protein family H (Hsp110) member 1.
    
 
 0.570
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 
 0.531
trpc4
Histidine triad nucleotide binding protein 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.497
ADAMTSL1
ADAMTS like 1.
      
 0.481
trim3
Surfeit 4, gene 1.
    
 
 0.472
calr
Calreticulin.
      
 0.461
ADAMTS19
ADAM metallopeptidase with thrombospondin type 1 motif 19.
      
 0.459
vim-2
GTPase, very large interferon-inducible pseudogene 1.
      
 0.459
agpat1
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 
 0.459
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.