STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fntbProtein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (414 aa)    
Predicted Functional Partners:
fnta
Zinc finger CCHC-type containing 17.
    
 0.994
rce1
RCE1 homolog, prenyl protein peptidase (S. cerevisiae).
    
 0.953
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.950
dhdds
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.944
ggps1
Protocadherin 8; Belongs to the FPP/GGPP synthase family.
   
 0.937
pdss1
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 0.937
fdps
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 0.934
nus1
PTPRF interacting protein, binding protein 2 (liprin beta 2).
     
 0.931
pdss2
Hydroxysteroid 11-beta-dehydrogenase 1-like protein; Belongs to the FPP/GGPP synthase family.
   
 0.926
ICMT
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.527
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.