STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfascTransmembrane protein 56. (1313 aa)    
Predicted Functional Partners:
CNTN1
Contactin 1.
   
0.988
cntnap1
LOC100037844 protein.
   
 0.929
GLDN
Gliomedin.
      
 0.746
LOC108644694
Ubiquitin conjugating enzyme E2Q family-like 1.
    
 
 0.620
ptprg
Transcription factor A, mitochondrial.
    
 
 0.620
cntn2
Polymerase (RNA) II subunit I.
   
 
0.562
cntn4
Centrosomal protein 131kDa.
   
 
0.530
cntn5
Sonic hedgehog.
    
 
0.524
PTPRZ1
Protein tyrosine phosphatase receptor type Z1.
   
 
 0.506
FAM151B
Family with sequence similarity 151 member B.
   
 
 0.445
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.