STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm24RNA-binding protein 24; Plays a role in myogenic differentiation by regulating myog levels. May bind to the 3'-UTR of myog mRNA and regulate its stability (By similarity) (228 aa)    
Predicted Functional Partners:
rbm42
RNA-binding protein 42; May bind RNA
   
  
 0.855
rbfox2
RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events by binding to 5'-UGCAUGU-3' elements. Regulates alternative splicing of tissue-specific exons (By similarity)
   
 
 0.851
rbfox3
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events
   
 
 0.827
rbpms
RNA binding protein with multiple splicing
   
 
 0.823
esrp1
Epithelial splicing regulatory protein 1; mRNA splicing factor that regulates the formation of epithelial cell-specific isoforms. Specifically regulates the expression of FGFR2-IIIb, an epithelial cell-specific isoform of fgfr2. Acts by directly binding specific sequences in mRNAs. Binds the GU-rich sequence motifs in the ISE/ISS-3, a cis-element regulatory region present in the mRNA of fgfr2 (By similarity)
   
  
 0.704
rbm20
RNA binding motif protein 20
   
  
 0.703
epb41
Erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)
      
 0.699
velo1
Uncharacterized protein velo1; Velo1 protein
      
 0.668
sf1
Uncharacterized protein; Splicing factor 1
   
 
 0.655
ENSXETP00000028907
Uncharacterized protein
      
 0.644
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. (Silurana) tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, western clawed frog
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