STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALN81333.1Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)    
Predicted Functional Partners:
ALN80263.1
Amino acid adenylation domain protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.922
ALN81334.1
[J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A).
   
   0.726
ALN78254.1
FMN-dependent dehydrogenase family protein.
     
 0.722
dhbF
Dimodular nonribosomal peptide synthase; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.673
hisD
hisD; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
      0.665
ALN79065.1
2Fe-2S iron-sulfur cluster binding domain protein.
   
 0.638
dltA-2
D-alanine--poly(phosphoribitol) ligase, subunit 1.
  
 0.631
dhbB
Isochorismatase; [Q] COG1535 Isochorismate hydrolase.
  
 
 0.619
acrA1
Oxidoreductase, short-chain dehydrogenase/reductase family; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
 0.584
ALN81994.1
[C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
  
 0.555
Your Current Organism:
Lysobacter antibioticus
NCBI taxonomy Id: 84531
Other names: ATCC 29479, DSM 2044, L. antibioticus, LMG 8760, LMG:8760, Lysobacter sp. DWu169, Lysobacter sp. DWu175, UASM 3C
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