STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0012Conserved hypothetical protein; Similar to rsbU. (473 aa)    
Predicted Functional Partners:
SYNW1068
Conserved hypothetical protein.
 
 
 0.979
SYNW1027
Conserved hypothetical protein; STAS domain; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.944
argH
Fumarate lyase:Delta crystallin.
       0.742
SYNW0009
Conserved hypothetical protein; Predicted membrane protein.
       0.691
SYNW0010
NusB family protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.691
ftsY
Signal recognition particle docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.691
SYNW1231
Conserved hypothetical protein.
   
    0.650
SYNW0008
Conserved hypothetical protein.
       0.523
SYNW0006
Conserved hypothetical protein.
 
     0.497
SYNW1232
Possible type 3 alternative RNA polymerase sigma factor; Belongs to the sigma-70 factor family.
 
 
 0.488
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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