STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcEPutative glycolate oxidase subunit GlcE; synonym:(S)-2-hydroxy-acid oxidase. (383 aa)    
Predicted Functional Partners:
SYNW1808
Putative glycolate oxidase subunit GlcD.
 
  
  0.991
SYNW0163
Putative glycolate oxidase subunit (Fe-S) protein.
 
 
 0.981
SYNW0306
Conserved hypothetical protein.
   
 
 0.906
spt,
Class-V aminotransferase.
  
 
 0.901
SYNW1986
Conserved hypothetical protein.
    
 0.901
SYNW1637
Conserved hypothetical protein.
  
     0.715
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT.
     
 0.636
SYNW0162
Conserved hypothetical protein.
       0.573
guaB
Putative IMP dehydrogenase.
  
 0.417
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.