STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0186Possible phosphatase. (188 aa)    
Predicted Functional Partners:
kpsF
Putative polysialic acid capsule expression protein KpsF; Citation: Tzeng et al. (2002) J. Biol. Chem. 277:24103-24113; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 0.993
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
  
 0.988
kdsB2
Putative CTP:CMP-3-deoxy-D-manno-octulosonate transferase; Belongs to the KdsB family.
 
  
 0.968
kdsB1
Putative CMP-KDO synthetase.
 
  
 0.962
SYNW0398
Putative acylneuraminate cytidylyltransferase.
 
   0.945
SYNW0185
Conserved hypothetical.
       0.774
SYNW0444
Putative acylneuraminate cytidylyltransferase.
 
   0.723
SYNW0188
Possible polyA polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.576
SYNW0189
Conserved hypothetical protein; Q8Z772 (Q8Z772) Putative membrane protein, Length = 516 Score = 70.1 bits (170), Expect = 5e-11 Identities = 98/370 (26%).
       0.569
SYNW0397
Conserved hypothetical protein.
 
   
 0.509
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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