STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0232Possible leucine dehydrogenase. (221 aa)    
Predicted Functional Partners:
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT.
  
 
 0.997
ilvE
Putative branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.913
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
   
 0.912
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
   
 
 0.907
SYNW0233
Conserved hypothetical protein.
  
    0.776
solA
Putative sarcosine oxidase.
  
    0.642
SYNW0229
Putative glycine betaine transporter, BCCT family; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.636
SYNW0231
Hypothetical.
       0.636
SYNW0235
Phosphoglucomutase/phosphomannomutase family protein.
  
  
 0.588
icd
Isocitrate dehydrogenase.
   
 0.584
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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