STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0274Conserved hypothetical protein; Predicted membrane protein. (384 aa)    
Predicted Functional Partners:
SYNW0273
Conserved hypothetical protein.
 
   
 0.972
ntcA
Global nitrogen regulatory protein, CRP family of transcriptional regulators.
     
 0.777
som-4
Possible porin-likely pseudogene; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.997 at residue 24; Belongs to the OprB family.
  
     0.774
som-2
Possible porin; Belongs to the OprB family.
  
     0.773
som-3
Possible porin; Belongs to the OprB family.
  
     0.773
som
Possible porin; Belongs to the OprB family.
  
     0.771
SYNW1113
Possible permease.
 
     0.759
SYNW0555
Chloroplast outer envelope membrane protein homolog.
  
     0.733
SYNW0337
Conserved hypothetical protein.
 
     0.711
SYNW1287
Conserved hypothetical protein.
  
     0.679
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.