STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0284Possible bicarbonate transporter, ICT family. (431 aa)    
Predicted Functional Partners:
trmB
Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.804
SYNW0283
Some similarity to bacterial conserved hypothetical proteins some similarity to glucosamine kinase of homo sapiens and mus musculus.
       0.784
SYNW0286
Conserved hypothetical protein.
       0.784
SYNW0311
Conserved hypothetical protein.
  
  
 0.646
SYNW0287
Conserved hypothetical protein; Predicted membrane protein.
 
     0.619
SYNW1251
Conserved hypothetical protein.
 
     0.613
SYNW0288
Conserved hypothetical protein.
 
     0.611
som
Possible porin; Belongs to the OprB family.
  
     0.609
manC
GDP-mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.607
SYNW0718
Possible beta-lactamase family protein.
 
     0.579
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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