STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtA2Putative urea binding protein; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715. (426 aa)    
Predicted Functional Partners:
urtC
Putative membrane protein of ABC transport system; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.989
urtB
Putative urea ABC transporter; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.987
urtE
Putative ATP-binding subunit of urea ABC transport system.
 
 
 0.976
urtD
Putative ATP-binding subunit of urea ABC transport system; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715.
 
  
 0.963
urtA1
Putative urea ABC transporter, urea binding protein; NtcA like promoter sequence (GTTN8TACN23TAN3T) begining 66 bases (position 2348937..2348895) upstream of putative translation start codon; Citation: Valladares et al. (2002) Mol. Microbiol. 43:703-715.
  
  
 
0.900
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT.
     
 0.721
SYNW1973
Possible transcriptional regulator, luxR family.
      
 0.568
SYNW0375
Conserved hypothetical protein; Gene family.
       0.476
ureE
Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.475
ureC
Urease alpha subunit; Citation: Collier et al. (1999) Microbiology 145:447-459; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.440
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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