STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0620Possible ABC transporter involved in polysaccharide efflux. (258 aa)    
Predicted Functional Partners:
SYNW0639
Possible ABC transporter involved in polysaccharide efflux.
 
 0.999
SYNW0640
Possible ABC transporter involved in polysaccharide efflux.
 
 
 0.991
SYNW0400
Similar to capsule polysaccharide protein kpsS; Possible polysaccharide modification protein.
 
  
 0.946
SYNW0399
Possible polysaccharide export protein.
 
  
 0.907
SYNW0645
Putative glycosyltransferase family 2 protein.
 
  
 0.813
SYNW0404
Conserved hypothetical protein, similar to GumB protein.
  
  
 0.708
SYNW0420
Conserved hypothetical protein.
  
  
 0.708
SYNW0311
Conserved hypothetical protein.
  
 
 0.647
SYNW1991
Conserved hypothetical protein.
   
    0.630
manC
GDP-mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.583
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.