STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0712Possible sufE protein. (141 aa)    
Predicted Functional Partners:
SYNW0322
Putative cysteine desulfurase or selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.845
SYNW0713
Conserved hypothetical.
       0.787
SYNW1689
Putative L-cysteine/cystine lyase; Citation: Leibrecht and Kessler (1997) J. Biol. Chem. 272:10442-10447.
  
 
 0.777
SYNW0714
Conserved hypothetical protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.697
ruvC
Holliday junction resolvase RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.697
chlI
Protoporphyrin IX Magnesium-chelatase subunit ChlI; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
       0.677
SYNW0320
ABC transporter, ATP-binding component.
 
   0.667
thrA,hom
Homoserine dehydrogenase; Putative assignment.
       0.654
SYNW0319
ABC transporter, membrane component.
 
 
 0.616
SYNW0321
ABC transporter, membrane component.
 
 
 0.600
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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