STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0877Putative histone deacetylase/AcuC/AphA family protein. (323 aa)    
Predicted Functional Partners:
SYNW2483
Conserved hypothetical protein.
    
 0.886
htpG
Heat shock protein HtpG.
    
 0.821
SYNW0039
Possible helicase.
    
 0.778
SYNW2362
SNF2 helicase homolog.
    
 0.778
cbbX
Probable RuBisCo-expression protein CbbX.
   
 0.697
SYNW1892
Conserved hypothetical protein; ATPase, AAA family protein.
   
 0.697
SYNW1344
Possible phosphoribulokinase/uridine kinase family protein.
   
 0.670
serA
Putative D-3-phosphoglycerate dehydrogenase (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.569
SYNW0770
WH8120 genome contains an IMP dehydrogenase (SYNW0725) with greater similarity to other IMP dehydrogenases than this ORF.
  
  
 0.490
atpB
ATP synthase beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 0.487
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.