STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW0964Possible LytR-membrane bound transcriptional regulator. (319 aa)    
Predicted Functional Partners:
SYNW1287
Conserved hypothetical protein.
 
     0.678
SYNW0781
Conserved hypothetical protein.
  
     0.566
SYNW0963
Conserved hypothetical protein.
       0.559
SYNW2133
Conserved hypothetical protein.
 
     0.518
rffM
Glycosyl transferase WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
 
   
 0.510
tyrA
Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.
  
     0.488
malQ
Putative 4-alpha-glucanotransferase.
     
 0.473
som-2
Possible porin; Belongs to the OprB family.
  
     0.445
som-4
Possible porin-likely pseudogene; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.997 at residue 24; Belongs to the OprB family.
  
     0.442
som
Possible porin; Belongs to the OprB family.
  
     0.424
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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