STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1027Conserved hypothetical protein; STAS domain; Belongs to the anti-sigma-factor antagonist family. (99 aa)    
Predicted Functional Partners:
SYNW1068
Conserved hypothetical protein.
  
 
 0.992
SYNW1231
Conserved hypothetical protein.
  
    0.958
SYNW0012
Conserved hypothetical protein; Similar to rsbU.
  
 
 0.944
SYNW0211
Possible ABC transporter, ATP-binding component.
   
   0.937
SYNW0212
Possible ABC transporter.
  
   0.903
SYNW0582
Possible transporter, membrane component; Belongs to the MlaE permease family.
   
   0.901
mrnC
Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
       0.799
SYNW1029
Possible tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.799
rpaC
Putative regulator; Citation: Emlyn-Jones et al. (1999) Molecular Microbiology 33:1050-1058.
 
     0.757
apcA
Allophycocyanin alpha chain.
  
     0.745
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.