STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1146Possible phage integrase; Contains the applicable subsitutions in the R-H-R-Y motif identified by Nunes-Duby et al 1998. (380 aa)    
Predicted Functional Partners:
nrdJ
Ribonucleotide reductase (Class II); Citation: Gleason and Olszewski (2002) J. Bacteriol. 184:6544-6550.
 
     0.834
SYNW0527
Conserved hypothetical protein.
  
     0.772
SYNW0836
Conserved hypothetical protein.
  
     0.769
SYNW1354
Conserved hypothetical protein.
  
     0.769
SYNW1522
Conserved hypothetical protein.
  
     0.761
SYNW1258
Conserved hypothetical protein.
  
     0.758
hli8
Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219.
  
     0.758
rnpA
Bacterial ribonuclease P protein component of ribozyme; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
   
 0.742
SYNW1333
Conserved hypothetical.
  
     0.726
SYNW1609
Conserved hypothetical protein.
  
     0.725
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.