STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1168Putative phosphonate ABC transporter. (502 aa)    
Predicted Functional Partners:
SYNW1169
Putative phosphonate ABC transporter.
 
 
 0.994
SYNW1170
Putative phosphonate binding protein for ABC transporter.
 
 
 0.993
SYNW1167
Conserved hypothetical protein; Possible role in phosphonate metabolism.
       0.784
aspC
Aminotransferases class-I; Possible role in phosphonate metabolism.
       0.728
SYNW1166
Conserved hypothetical protein; Possible role in phosphonate metabolism.
       0.694
SYNW1165
Hypothetical.
       0.562
SYNW1172
Hypothetical.
       0.500
SYNW0190
Conserved hypothetical protein.
 
     0.498
SYNW1066
Conserved hypothetical protein.
 
     0.462
SYNW1173
Uracil-DNA glycosylase.
       0.455
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.