STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1173Uracil-DNA glycosylase. (187 aa)    
Predicted Functional Partners:
gcpE
GcpE protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.735
SYNW1175
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
    0.719
SYNW1172
Hypothetical.
       0.572
SYNW2252
Conserved hypothetical protein.
  
    0.491
aspC
Aminotransferases class-I; Possible role in phosphonate metabolism.
       0.487
SYNW1168
Putative phosphonate ABC transporter.
       0.455
SYNW1169
Putative phosphonate ABC transporter.
       0.455
SYNW1170
Putative phosphonate binding protein for ABC transporter.
       0.455
ssb
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
    
   0.434
SYNW1777
Conserved hypothetical protein.
    
   0.434
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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