STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1340ABC transporter, ATP binding domain, possibly Mn transporter. (251 aa)    
Predicted Functional Partners:
SYNW1341
ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.995
SYNW1337
ABC transporter component, possibly Mn transport.
 
 0.994
SYNW0969
ABC transporter component, possibly Mn transport.
 
 
 0.918
SYNW0971
ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.890
SYNW2479
ABC transporter component, possibly Zn transport.
 
 
 0.866
SYNW2481
Putative zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.847
nth
Putative endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.560
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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