STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1341ABC transporter, substrate binding protein, possibly Mn; Belongs to the bacterial solute-binding protein 9 family. (311 aa)    
Predicted Functional Partners:
SYNW1337
ABC transporter component, possibly Mn transport.
 
 0.995
SYNW1340
ABC transporter, ATP binding domain, possibly Mn transporter.
 
 
 0.995
SYNW2479
ABC transporter component, possibly Zn transport.
  
 0.868
SYNW0969
ABC transporter component, possibly Mn transport.
 
  
 0.867
SYNW0970
ABC transporter, ATP binding domain, possibly Mn transport.
 
  
 0.830
SYNW2480
ABC transporter,ATP binding component, possibly zinc transport.
 
  
 0.761
nth
Putative endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
    0.561
rps14,
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.433
rpl28,
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.424
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.