STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hypA2Putative hydrogenase expression/formation protein HypA2. (132 aa)    
Predicted Functional Partners:
hypB
Hydrogenase expression/formation protein HypB.
 
 
 0.971
SYNW1412
Putative agmatine ureohydrolase; Belongs to the arginase family.
 
     0.900
SYNW0419
Conserved hypothetical protein; Predicted membrane protein.
 
 
   0.725
SYNW1415
ABC transporter, nitrate-like substrate binding protein.
 
   
 0.712
trpC
Indole-3-glycerol phosphate synthase; Putative assignment; Belongs to the TrpC family.
      
 0.691
SYNW2041
MRP protein homolog; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
   
   0.688
trpE
Anthranilate synthase component I and chorismate binding enzyme.
    
 
 0.679
trpD/G
Putative Anthranilate synthase component II; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
      
 0.650
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
      
 0.648
BioA
Putative diaminopelargonic acid synthase; Citation: Otsuka et al. (1988) J. Biol. Chem. 263:19577-19585; Kack et al. (1999) J. Mol. Biol. 291:857-876; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
      
 0.630
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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