STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1609Conserved hypothetical protein. (134 aa)    
Predicted Functional Partners:
SYNW1333
Conserved hypothetical.
  
     0.774
SYNW1608
Putative circadian phase modifier CpmA homolog.
       0.773
trmD
Putative bifuntional enzyme: tRNA methyltransferase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP); Belongs to the RNA methyltransferase TrmD family.
       0.773
cpcS-2
Hypothetical; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
       0.773
SYNW1166
Conserved hypothetical protein; Possible role in phosphonate metabolism.
  
     0.770
SYNW1167
Conserved hypothetical protein; Possible role in phosphonate metabolism.
  
     0.757
SYNW1208
Conserved hypothetical protein.
  
     0.737
SYNW1527
Conserved hypothetical protein.
  
     0.728
SYNW0845
Possible AEC transporter family.
  
     0.725
SYNW1146
Possible phage integrase; Contains the applicable subsitutions in the R-H-R-Y motif identified by Nunes-Duby et al 1998.
  
     0.725
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.