STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmK2Possible carbon dioxide concentrating mechanism protein CcmK. (183 aa)    
Predicted Functional Partners:
SYNW1714
Putative carboxysome peptide A.
 
 
 
 0.952
SYNW1713
Putative carboxysome peptide B.
 
 
 
 0.940
SYNW1721
Conserved hypothetical protein.
 
 
 
 0.828
csoS3
Putative Carboxysome shell polypeptide CsoS3.
 
   
 0.807
rbcS,
Ribulose bisphosphate carboxylase, small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
   
 
 0.806
csoS2
Putative carboxysome structural peptide CsoS2.
 
   
 0.777
SYNW1708
Conserved hypothetical protein.
 
     0.677
rbcL,
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.676
chpX
Putative CO2 hydration protein ChpX.
     
 0.553
ndhF1
NADH dehydrogenase I chain 5 (or L).
     
 0.551
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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