STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmk1Carbon dioxide concentrating mechanism protein CcmK; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (103 aa)    
Predicted Functional Partners:
rbcL,
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.930
SYNW1714
Putative carboxysome peptide A.
 
 
 
 0.926
rbcS,
Ribulose bisphosphate carboxylase, small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
   
 
 0.912
SYNW1713
Putative carboxysome peptide B.
 
 
 
 0.909
csoS3
Putative Carboxysome shell polypeptide CsoS3.
 
   
 0.864
csoS2
Putative carboxysome structural peptide CsoS2.
 
   
 0.862
SYNW1721
Conserved hypothetical protein.
 
 
 
 0.850
atpA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
      
 0.652
SYNW1708
Conserved hypothetical protein.
 
     0.556
ndhD2
NADH dehydrogenase I chain 4 (or M).
     
 0.487
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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