STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1808Putative glycolate oxidase subunit GlcD. (487 aa)    
Predicted Functional Partners:
glcE
Putative glycolate oxidase subunit GlcE; synonym:(S)-2-hydroxy-acid oxidase.
 
  
  0.991
SYNW0163
Putative glycolate oxidase subunit (Fe-S) protein.
 
 0.983
SYNW0306
Conserved hypothetical protein.
   
 
 0.906
spt,
Class-V aminotransferase.
  
 
 0.901
SYNW1986
Conserved hypothetical protein.
    
 0.901
glsF,
Ferredoxin-dependent glutamate synthase, Fd-GOGAT.
     
 0.636
hemL,gsa
Glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.
     
 0.533
SYNW1811
Putative cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.501
SYNW1810
Hypothetical.
       0.499
ndhD2
NADH dehydrogenase I chain 4 (or M).
      
 0.424
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.