STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW1823Conserved hypothetical protein. (94 aa)    
Predicted Functional Partners:
rpl19
Possible 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.698
ycf33
Conserved hypothetical protein; Predicted membrane protein.
  
     0.685
SYNW2339
Conserved hypothetical protein.
  
     0.678
SYNW0326
Conserved hypothetical protein.
  
     0.660
hupE
Putative hydrogenase accessory protein.
  
     0.603
hli3
Putative high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219.
  
     0.599
psaK
Possible photosystem I reaction center subunit X (PsaK).
  
     0.594
SYNW0659
Conserved hypothetical protein.
  
     0.590
map
Putative methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.587
SYNW1627
Possible peptidase S26 family protein.
  
     0.583
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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