STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hli8Possible high light inducible protein; Has EXXNGXXAMXG motif; Citation: Bhaya et al. (2002) FEMS Microbiol Lett 215:209-219. (59 aa)    
Predicted Functional Partners:
nrdJ
Ribonucleotide reductase (Class II); Citation: Gleason and Olszewski (2002) J. Bacteriol. 184:6544-6550.
  
     0.763
SYNW1354
Conserved hypothetical protein.
  
     0.759
SYNW1146
Possible phage integrase; Contains the applicable subsitutions in the R-H-R-Y motif identified by Nunes-Duby et al 1998.
  
     0.758
SYNW1886
Conserved hypothetical protein.
  
     0.752
SYNW1880
Conserved hypothetical protein.
  
     0.739
SYNW0527
Conserved hypothetical protein.
  
     0.737
SYNW1258
Conserved hypothetical protein.
  
     0.734
pex
Possible Pex protein.
  
     0.731
SYNW1748
Phage integrase family; Conserved in three marine cyanobacterial genomes. in addition to BLAST hits contains the applicable subsitutions in the R-H-R-Y motif identified by Nunes-Duby et al 1998.
  
     0.726
SYNW1030
Conserved hypothetical protein.
  
     0.713
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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