STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW2228Conserved hypothetical protein; Found in MIT9313 and Trichodesmium. Similar to SYNW2231. (542 aa)    
Predicted Functional Partners:
SYNW2229
Conserved hypothetical protein; Found in other cyanobacteria.
 
     0.730
SYNW2220
Conserved hypothetical protein.
  
     0.700
SYNW1812
Conserved hypothetical protein.
  
     0.619
SYNW2230
Conserved hypothetical membrane protein; COG3463.
 
     0.552
SYNW1801
Conserved hypothetical protein; Predicted membrane protein.
 
     0.534
som-4
Possible porin-likely pseudogene; Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.997 at residue 24; Belongs to the OprB family.
       0.506
SYNW1531
Conserved hypothetical protein; Similar to orf in PCC7942.
  
     0.485
SYNW1128
Conserved hypothetical protein.
  
     0.484
SYNW2231
Conserved hypothetical protein; Found in MIT9313. Possible COG3463 membrane protein.
 
    
0.479
SYNW1799
Conserved hypothetical protein; PhoX domain (predicted phosphatase).
  
     0.471
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.