SYNW2234 protein (Synechococcus sp. WH 8102)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SYNW2234

Possible ABC transporter, ATP-binding component. (245 aa)

Predicted Functional Partners:

SYNW0658

0.990

SYNW1080

0.953

SYNW1154

0.879

SYNW2233

0.815

SYNW1169

0.737

SYNW0217

0.727

cbiG/cobJ

0.628

SYNW2480

0.628

rpsE,rps5

0.627

cobL

0.525

Your Current Organism:

Synechococcus sp. WH 8102

NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SYNW0217	SYNW1169	SYNW0217	SYNW1169	ABC transporter, ATP binding component.	Putative phosphonate ABC transporter.	0.720
SYNW0217	SYNW2234	SYNW0217	SYNW2234	ABC transporter, ATP binding component.	Possible ABC transporter, ATP-binding component.	0.727
SYNW0658	SYNW1080	SYNW0658	SYNW1080	Possible cobalt transport protein.	Conserved hypothetical protein.	0.987
SYNW0658	SYNW1154	SYNW0658	SYNW1154	Possible cobalt transport protein.	Possible ABC transporter, ATP-binding component.	0.986
SYNW0658	SYNW2234	SYNW0658	SYNW2234	Possible cobalt transport protein.	Possible ABC transporter, ATP-binding component.	0.990
SYNW0658	cbiG/cobJ	SYNW0658	SYNW2126	Possible cobalt transport protein.	Bifunctional cbiH protien and PRECORRIN-3B C17-METHYLTRANSFERASE; Citation: Debussche et al. (1993) J. Bacteriol. 175:7430-7440; Roth et al. (1993) J. Bacteriol. 175:3303-3316.	0.800
SYNW0658	cobL	SYNW0658	SYNW1596	Possible cobalt transport protein.	Putative precorrin-6y methylase; Citation: Blanche et al. (1992) J. Bacteriol. 174:1050-1052.	0.632
SYNW1080	SYNW0658	SYNW1080	SYNW0658	Conserved hypothetical protein.	Possible cobalt transport protein.	0.987
SYNW1080	SYNW1154	SYNW1080	SYNW1154	Conserved hypothetical protein.	Possible ABC transporter, ATP-binding component.	0.953
SYNW1080	SYNW2234	SYNW1080	SYNW2234	Conserved hypothetical protein.	Possible ABC transporter, ATP-binding component.	0.953
SYNW1154	SYNW0658	SYNW1154	SYNW0658	Possible ABC transporter, ATP-binding component.	Possible cobalt transport protein.	0.986
SYNW1154	SYNW1080	SYNW1154	SYNW1080	Possible ABC transporter, ATP-binding component.	Conserved hypothetical protein.	0.953
SYNW1154	SYNW2234	SYNW1154	SYNW2234	Possible ABC transporter, ATP-binding component.	Possible ABC transporter, ATP-binding component.	0.879
SYNW1154	SYNW2480	SYNW1154	SYNW2480	Possible ABC transporter, ATP-binding component.	ABC transporter,ATP binding component, possibly zinc transport.	0.662
SYNW1154	cbiG/cobJ	SYNW1154	SYNW2126	Possible ABC transporter, ATP-binding component.	Bifunctional cbiH protien and PRECORRIN-3B C17-METHYLTRANSFERASE; Citation: Debussche et al. (1993) J. Bacteriol. 175:7430-7440; Roth et al. (1993) J. Bacteriol. 175:3303-3316.	0.628
SYNW1154	cobL	SYNW1154	SYNW1596	Possible ABC transporter, ATP-binding component.	Putative precorrin-6y methylase; Citation: Blanche et al. (1992) J. Bacteriol. 174:1050-1052.	0.525
SYNW1154	rpsE,rps5	SYNW1154	SYNW2083	Possible ABC transporter, ATP-binding component.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.621
SYNW1169	SYNW0217	SYNW1169	SYNW0217	Putative phosphonate ABC transporter.	ABC transporter, ATP binding component.	0.720
SYNW1169	SYNW2234	SYNW1169	SYNW2234	Putative phosphonate ABC transporter.	Possible ABC transporter, ATP-binding component.	0.737
SYNW1169	SYNW2480	SYNW1169	SYNW2480	Putative phosphonate ABC transporter.	ABC transporter,ATP binding component, possibly zinc transport.	0.602