STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW2239Putative P-type ATPase transporter for copper. (771 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.800
holB
DNA polymerase III, delta prime subunit.
       0.799
ycf3
Cyanobacterial conserved hypothetical; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits; Belongs to the Ycf3 family.
       0.593
SYNW2501
Putative chloride channel.
 
  
 0.574
SYNW0798
Putative transcriptional regulator, ArsR family.
  
  
 0.549
SYNW0687
Putative thioredoxin reductase.
  
  
 0.516
SYNW0925
Possible Na+/H+ antiporter, CPA2 family.
  
  
 0.486
SYNW1472
Putative cation efflux transporter (CDF family); Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.466
SYNW2241
Weak similarity to phage integrase family.
       0.437
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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