STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtD,Phytoene desaturase. (472 aa)    
Predicted Functional Partners:
crtB,pys
Phytoene synthases.
  
 0.996
crtH
Carotenoid isomerase.
 
   
 0.924
crtQ,
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
0.919
psbO
Photosystem II manganese-stabilizing polypeptide.
  
     0.772
SYNW2261
Conserved hypothetical protein.
  
     0.769
SYNW1014
Conserved hypothetical protein.
  
     0.767
psb27
Possible photosystem II Psb27 protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.760
SYNW0335
YGGT family, conserved hypothetical integral membrane protein.
  
     0.759
psb28
Putative photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
  
     0.757
SYNW0250
Conserved hypothetical protein; Predicted membrane protein.
  
     0.754
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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