STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNW2289Two-component response regulator. (245 aa)    
Predicted Functional Partners:
nblS
Two-component sensor histidine kinase.
 
 0.884
phoR
Two-component sensor histidine kinase, phosphate sensing.
 
 0.859
sasA
Two-component sensor histidine kinase; May be involved in signal transduction. Participates in the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria, via its interaction with KaiC. Required for robustness of the circadian rhythm of gene expression and is involved in clock outputs.
 
 
 0.815
SYNW2288
Probable pseudouridine synthase.
       0.775
SYNW1598
Missing some conserved amino acids thought to be involved in response regulator functioning.
  
 
 0.739
SYNW2290
Conserved hypothetical.
       0.701
SYNW0807
Two-component sensor histidine kinase.
 
 
 0.645
SYNW0246
Two-component sensor histidine kinase.
 
 
 
 0.585
rpaA
Two-component response regulator.
  
 
0.555
SYNW2291
NifS-like aminotransferase class-V.
       0.545
Your Current Organism:
Synechococcus sp. WH 8102
NCBI taxonomy Id: 84588
Other names: S. sp. WH 8102, Synechococcus sp. WH8102
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