node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SYNW1412 | SYNW2422 | SYNW1412 | SYNW2422 | Putative agmatine ureohydrolase; Belongs to the arginase family. | Arginase family protein; Belongs to the arginase family. | 0.925 |
SYNW1412 | speA | SYNW1412 | SYNW2359 | Putative agmatine ureohydrolase; Belongs to the arginase family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.927 |
SYNW1738 | speA | SYNW1738 | SYNW2359 | Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.475 |
SYNW2422 | SYNW1412 | SYNW2422 | SYNW1412 | Arginase family protein; Belongs to the arginase family. | Putative agmatine ureohydrolase; Belongs to the arginase family. | 0.925 |
SYNW2422 | speA | SYNW2422 | SYNW2359 | Arginase family protein; Belongs to the arginase family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.930 |
argH | lysA | SYNW0013 | SYNW0936 | Fumarate lyase:Delta crystallin. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.535 |
argH | speA | SYNW0013 | SYNW2359 | Fumarate lyase:Delta crystallin. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.835 |
lysA | argH | SYNW0936 | SYNW0013 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Fumarate lyase:Delta crystallin. | 0.535 |
lysA | speA | SYNW0936 | SYNW2359 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.444 |
ndk | speA | SYNW2358 | SYNW2359 | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.592 |
smpB | speA | SYNW0134 | SYNW2359 | tmRNA binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...] | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | 0.543 |
speA | SYNW1412 | SYNW2359 | SYNW1412 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Putative agmatine ureohydrolase; Belongs to the arginase family. | 0.927 |
speA | SYNW1738 | SYNW2359 | SYNW1738 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Conserved hypothetical protein; Catalyzes the decarbonylation of fatty aldehydes to alkanes. | 0.475 |
speA | SYNW2422 | SYNW2359 | SYNW2422 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Arginase family protein; Belongs to the arginase family. | 0.930 |
speA | argH | SYNW2359 | SYNW0013 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Fumarate lyase:Delta crystallin. | 0.835 |
speA | lysA | SYNW2359 | SYNW0936 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.444 |
speA | ndk | SYNW2359 | SYNW2358 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.592 |
speA | smpB | SYNW2359 | SYNW0134 | Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. | tmRNA binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switc [...] | 0.543 |